Basic Information
VIS ID
TVIS44007096
Fusion event
HTLV-1-LOC107984162 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p13
Reference genome
GRCh37/hg19
Start
15214251/15172252 (Hg38)
End
15214251/15172252 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107984162
Nearest miRNA
hsa-mir-1265/Upstream/735591; hsa-mir-107/Downstream/2672855;
Nearest TSS
ENST00000439456/Upstream/3559; ENST00000433455/Downstream/65240;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/3537, chr10-CpG: 22/Downstream/40347
Nearby gene
NMT2(-3542) ;
Upstream sequence
aagactctgtctcaaaaaaaaaaaaaaaaaagaaaaaaagaaaaaaaaTCTTAAAGACACTCCTTTTTTTACTATCACGATCACTATCTGTATATCTGGG
Downstream sequence
TATGTCTGAAAAAGACTTATGCCAAACCATTAGTTTGCACTTTCCATTCTGGGTTCACAAAAGCAAAGCCCATTACTTTTGCAATACACTAGCTATTCTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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