Basic Information
VIS ID
TVIS44007133
Fusion event
HTLV-1-chr16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
52736184/52702272 (Hg38)
End
52736184/52702272 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/1959895; hsa-mir-11401/Downstream/3543248;
Nearest TSS
ENST00000527434/Upstream/50167; ENST00000561869/Downstream/350577;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/154574, chr16-CpG: 54/Downstream/352532
Nearby gene
CASC16(No orient, 95297)
Upstream sequence
attgatggacatttaagttgattctgtatctttgctattgtgaatagtgctgcaatcaacatacaagtgtggatatctttctcgtataatttctttccct
Downstream sequence
ttgggtagatacccagtagtgggaatgctggatcaaatggtagttctattttttagttctttgagaaatctccatactgttttccataaaggctgtatta
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate