VISDB Viral Integration Site DataBase

VIS ID

TVIS44007200

Fusion event

HTLV-1-SEMA3E integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr7

Cytoband

q21.11

Reference genome

Start

End

83027919/83398603 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-6878-3p ; hsa-mir-6741-3p ; hsa-mir-642a-5p ; hsa-mir-6830-3p ; hsa-mir-3124-3p ; hsa-mir-4778-3p ; hsa-mir-877-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-4284 ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6890-3p ; hsa-mir-4753-3p ; hsa-mir-222-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-122-3p ; hsa-mir-6722-5p ; hsa-mir-1288-3p ; hsa-mir-6499-3p ; hsa-mir-17-3p ; hsa-mir-5693 ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-1250-3p ; hsa-mir-129-5p ; hsa-mir-153-5p ; hsa-mir-3672 ; hsa-mir-4294 ; hsa-mir-4743-5p ; hsa-mir-4754 ; hsa-mir-4760-3p ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-664a-3p ; hsa-mir-664b-3p ; hsa-mir-6812-3p ; hsa-mir-6864-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-10525/Upstream/7483334; hsa-mir-10399/Downstream/8805412;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/235507, chr7-CpG: 30/Downstream/350966

Upstream sequence

TGATGACACCGTTAATCATGAACCCACAGTGCTGAGCATATTATTAACATTAACTTCCTAAAATGAATGAATAAAATACAGCCTGTACCAGAGATCAATT

Downstream sequence

TCTAAGAATAAGATAGATGTTTTCTTTTTTAAATCTTTGTTTTAAAAAACAAAAGGATggctgggcatggtggcttacgccagtaataccagcactttgg