Basic Information
VIS ID
TVIS44007203
Fusion event
HTLV-1-VENTXP5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr8
Cytoband
p12
Reference genome
GRCh37/hg19
Start
33578776/33721258 (Hg38)
End
33578776/33721258 (Hg38)
Orient
-
Location type
Intronic
Target gene
VENTXP5
Nearest miRNA
hsa-mir-124-1/Upstream/3763910; hsa-mir-10400/Downstream/7549790;
Nearest TSS
ENST00000518652/Upstream/116402; ENST00000517292/Downstream/34519;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/121261, chr8-CpG: 18/Downstream/1588
Nearby gene
DUSP26(-121152) ;
Upstream sequence
CACATTAGTTTGCTTCCTTACTTTTCTTTTTTCTGGTTGTAAACACTTCCAACAAGGCAGAAATGAGTAAGGGGAAAGTGGAACTTGCTGTGGACACGGC
Downstream sequence
CACAGGACCACGCTTTTGTTCCTGTTGGGATGCCTGGGTCGGTTTCACAGGTCGCCTCTCAGTCCTGCAGGCTGAACCCGTCTGTCTGGGTGCCCCGCGC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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