Basic Information
VIS ID
TVIS44007217
Fusion event
HTLV-1-SLC28A3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.32
Reference genome
GRCh37/hg19
Start
86905036/84290121 (Hg38)
End
86905036/84290121 (Hg38)
Orient
-
Location type
Intronic
Target gene
SLC28A3
Nearest miRNA
hsa-mir-101-2/Upstream/320264; hsa-let-7a-1/Downstream/4455715;
Nearest TSS
ENST00000422679/Upstream/11902; ENST00000359847/Downstream/50538;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/149336, chr9-CpG: 203/Downstream/378142
Upstream sequence
ACCAACTTTTGCCATATGGCAAAAAAAGACACTCTCTTGGCCTCCTTTTTCCACCAGCAATGGAAAAGAAAAGAAATAACAATAATAAAGAAAGAAGAGG
Downstream sequence
TTGGTGTTTTCATAATTCCAAAACATTCTTACCCCAAAAGAAATGTATGCACCTAGCACGCTTCCAGCAATGGTAGAGAACCCGGCGGTCATGATGGCGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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