Basic Information
VIS ID
TVIS44007335
Fusion event
HTLV-1-chr11 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
12127176/12105629 (Hg38)
End
12127176/12105629 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/322407; hsa-let-7a-2/Downstream/58054;
Nearest TSS
ENST00000527297/Upstream/11501; ENST00000530823/Downstream/4962;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/96335, chr11-CpG: 110/Downstream/4637
Nearby gene
MICAL2(+4947) ;
Upstream sequence
TTCCTGTCCTTGCCTCTAGCCAGCTGTTCTGGGAAGGGTTTGGAAGTACAAGTTGAAAGCTGTCTCCCAAGATCCATCAGTTACAGCAGTTCTGGAATGG
Downstream sequence
GCTTCGGGTTTATGTGGACAGGAATCTGCCCAGGCTGCAGGTGTGGCCCAGCCTGCCATGAGGGTGCTCTGGGTTTTGTGGCATCAGTTGATCTCTAGAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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