Basic Information
VIS ID
TVIS44007363
Fusion event
HTLV-1-AK7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
96933153/96466816 (Hg38)
End
96933153/96466816 (Hg38)
Orient
+
Location type
Intronic
Target gene
AK7
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1260a/Upstream/1328830; hsa-mir-1185-1/Downstream/3642603;
Nearest TSS
ENST00000550708/Upstream/68618; ENST00000554706/Downstream/16166;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/42520, chr14-CpG: 113/Downstream/35001
Upstream sequence
GTGAACTGTCAGGATTAACATGAAAAATACACGGCCGGAGAGAGTTGCCCATTTTCCTAATAGAAAACAACCCTCATTTTTCACTAACGTCATGTAGAAA
Downstream sequence
CTCCATACCATTAACAAGCCTTTAGATCACCAACTTTGTTTTGGCCTTATTAAAATGCTGGCTTGATTTATGGTATTTTTTTTCTAATGCTGCCCAAATA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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