Basic Information
VIS ID
TVIS44007372
Fusion event
HTLV-1-LOC105371078 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10323163/10229306 (Hg38)
End
10323163/10229306 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371078
Nearest miRNA
hsa-mir-1225/Upstream/4596740; hsa-mir-11401/Downstream/1077134;
Nearest TSS
ENST00000527434/Upstream/46552; ENST00000570163/Downstream/97128;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/45739, chr16-CpG: 22/Downstream/22873
Nearby gene
GRIN2A(-46552) ;
Upstream sequence
tacagcagcctcctacatggtgtcctgcttctatgcctgccccctcccacactacggactccccaccagcagccagagtgagcctttaaaatgcaactag
Downstream sequence
gtcttgacacctaaatgtattcagttcttgaggccaggtcattttgtgcctctaaaatcctccaatagcttcaaagccaggcgtggtggctcacgcccgt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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