Basic Information
VIS ID
TVIS44007401
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
21733350/21752712 (Hg38)
End
21733350/21752712 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/3282021; hsa-mir-1-1/Downstream/4455474;
Nearest TSS
ENST00000382410/Upstream/44442; ENST00000438222/Downstream/194935;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/38006, chr20-CpG: 69/Downstream/815617
Nearby gene
PAX1(+34226) ;
Upstream sequence
taatgtcttttctatactatattatagtatctactatctactatactatactgtttattattttagtgtactcttttctgttataaaaaaattaatgtaa
Downstream sequence
gtcagccttaggcaggtccttcaggtccttcactatattgcccaggtttttggtacatggttttaaattagttgtttatcatgttctctcattatgtaga
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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