Basic Information
VIS ID
TVIS44007407
Fusion event
HTLV-1-LOC105372753 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
26881687/25509375 (Hg38)
End
26881687/25509375 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372753
Nearest miRNA
hsa-let-7c/Upstream/2429983; hsa-mir-155/Downstream/64605;
Nearest TSS
ENST00000624081/Upstream/77674; ENST00000456917/Downstream/8963;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/147204, chr21-CpG: 51/Downstream/52736
Nearby gene
MIR155HG(+52770) ;
Upstream sequence
AAATTTTAGGAAGATAAAGGTCTGTGGAAACAAAATTATTCAAAATGTCCAATTACCTCAGTTACACTATAAGGTTCTTAAACTAACCTGGGTTTTTATC
Downstream sequence
TAACAAAACTCTGGTTTATACTAAGTATGTTTTAAAATTTTACTTAGAAGAGAATCAGTACATAATCCATATTCTTTAATATGGCCAGCTATGATAGGTT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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