Basic Information
VIS ID
TVIS44007442
Fusion event
HTLV-1-LOC285762 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q22.31
Reference genome
GRCh37/hg19
Start
119800230/119479065 (Hg38)
End
119800230/119479065 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC285762
Nearest miRNA
hsa-mir-10398/Upstream/409922; hsa-mir-1202/Downstream/536114;
Nearest TSS
ENST00000381078/Upstream/129304; ENST00000282561/Downstream/1627105;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/128806, chr6-CpG: 31/Downstream/1855460
Upstream sequence
GCTAGATTACCTGTCATAGCTCCCAGGAATCCTATATTTTGAGAAGATAACCATAGAATTAGGTCTTAAATACTTCCTAAAGTCTCTGACTCCTGTAGGG
Downstream sequence
GACTAGCTGTCCTTAGTACAACCATAAAATGATGGTATCCAAAATTGTTTGGAAAAAGTATTATGTTTTATATATTACTGTTAACAAATAAAGATCAAAA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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