Basic Information
VIS ID
TVIS44007507
Fusion event
HTLV-1-LINC02645 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
2520597/2478405 (Hg38)
End
2520597/2478405 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02645
Nearest miRNA
hsa-mir-5699/Upstream/402316; hsa-mir-107/Downstream/1512755;
Nearest TSS
ENST00000439456/Upstream/31053; ENST00000431209/Downstream/21316;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/163128, chr10-CpG: 68/Downstream/22866
Nearby gene
LINC00701(No orient, 163329)
Upstream sequence
taggattacaggcatgagccactgcacctggccaattccgtgtctttttgactcaattttccccaacagacaatggtgatattatacataactataatac
Downstream sequence
agcctcagaaccagaaacttgacatggatagaatccttggcgcttactcagattgtattagttttatacacactggtttggtgtgtgtgtagatttatgc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate