Basic Information
VIS ID
TVIS44007573
Fusion event
HTLV-1-NSUN6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.31
Reference genome
GRCh37/hg19
Start
18859575/18570646 (Hg38)
End
18859575/18570646 (Hg38)
Orient
-
Location type
Intronic
Target gene
NSUN6
Nearest miRNA
hsa-mir-1265/Upstream/725453; hsa-mir-107/Downstream/1981324;
Nearest TSS
ENST00000439456/Upstream/18824; ENST00000377275/Downstream/80976;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/429355, chr10-CpG: 24/Downstream/80953
Upstream sequence
tcttttccattctccattccaatccagtgtccattccattctccattccattccactgtccattccattccattctccattccattccattctccatacc
Downstream sequence
atcatccattccattccattctattctccattccatttcatgctccattccattccattctctattccattccattctccactccatttcattccattct
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate