Basic Information
VIS ID
TVIS44007603
Fusion event
HTLV-1-LOC107984781 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q23
Reference genome
GRCh37/hg19
Start
70825214/70532875 (Hg38)
End
70825214/70532875 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984781
Nearest miRNA
hsa-mir-10393/Upstream/453407; hsa-mir-11181/Downstream/2054342;
Nearest TSS
ENST00000557528/Upstream/26947; ENST00000630100/Downstream/53731;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/432008, chr15-CpG: 56/Downstream/52166
Nearby gene
SALRNA3(No orient, 82672)
Upstream sequence
AGTCTCTGTAGGGCAGGACACTGGGGCCTCATATCCAGGCCCGACACAACAATCCTCTTATCCCAGGCAAGTGGCCCTGGTAGCTGGCGAGTCCAGGAGA
Downstream sequence
GGAGGGACCATGATCAGTTTCCCACAGGCAGCCATGGAGGTGGCATCCAGCCCTCTGCTCAGGAGCCATAGAGCAGATGGTGGGGAGACGCCAAGGGGAC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate