Basic Information
VIS ID
TVIS44007647
Fusion event
HTLV-1-TET2-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q24
Reference genome
GRCh37/hg19
Start
106138240/105217083 (Hg38)
End
106138240/105217083 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
TET2-AS1
Nearest miRNA
hsa-mir-12113/Upstream/3886669; hsa-mir-1243/Downstream/4271615;
Nearest TSS
ENST00000502981/Upstream/39020; ENST00000265154/Downstream/182553;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/70272, chr4-CpG: 82/Downstream/256311
Upstream sequence
AAGTGTATTTTTTGTTTGTCCTAAATGTTTAGATTTTTTGAGTTTACAATTTTTTTGTGTGTTCTTTCTTTGTTCTTGCCCCTCCCTGCATTCTCTATGA
Downstream sequence
AGATACATGTCAGCACTATGCAACACTAAAATAACAATCAACCAAATTATATCCTATGAACAGACCTTTCTCTTCATTTCAAAGGCATAACTTGGATGGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate