Basic Information
VIS ID
TVIS44007658
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q16.3
Reference genome
GRCh37/hg19
Start
102803825/102355950 (Hg38)
End
102803825/102355950 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/3231254; hsa-mir-1202/Downstream/4428175;
Nearest TSS
ENST00000381078/Upstream/427807; ENST00000635857/Downstream/2376420;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/952852, chr6-CpG: 79/Downstream/2503294
Upstream sequence
acccccgcttgactgtccaccaccaaaaaagaaggaaaaggccatgtaaagacccccaacctccaggagcaacaggggtgggggcatggtttcccctacc
Downstream sequence
ctcagaagtctgaggatgaaaaggcttagcagggacagtgaggttttgagtccccatttccctcaccccttctcaagccccatgttctgggaaccaaaGC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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