Basic Information
VIS ID
TVIS44007676
Fusion event
HTLV-1-CDK5RAP2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
123161485/120399207 (Hg38)
End
123161485/120399207 (Hg38)
Orient
+
Location type
Intronic
Target gene
CDK5RAP2
miRNAs that regulate target gene
hsa-mir-1301-3p ; hsa-mir-324-3p ; hsa-mir-149-5p
Nearest miRNA
hsa-let-7a-1/Upstream/154157; hsa-mir-12126/Downstream/1720875;
Nearest TSS
ENST00000422679/Upstream/8930; ENST00000437707/Downstream/1812;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/1029271, chr9-CpG: 40/Downstream/95552
Upstream sequence
AAGAAACCTTTGGAAGGAAAGGGGTACTCAGGAGCACCAACCACTCCTGGAATGATTTGCAAGTAGGGAAGAATCAATGTGGCTATAACTTTTTTTGTGT
Downstream sequence
GTATATATATTTTATATGTAAGTGTATGAGCTGTATTTCTGTCTATGTAACAGTTACTACAATGTGCTAAGGATAAAAACATTGCATTAAGGGTCAACTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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