Basic Information
VIS ID
TVIS44007698
Fusion event
HTLV-1-LINC01088 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
80107654/79186500 (Hg38)
End
80107654/79186500 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01088
Nearest miRNA
hsa-mir-12113/Upstream/2610874; hsa-mir-1243/Downstream/3566837;
Nearest TSS
ENST00000502981/Upstream/101261; ENST00000511895/Downstream/9334;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/246909, chr4-CpG: 39/Downstream/778190
Upstream sequence
TTAATTCACCAGATGATAGGGGAAAACTTCTTTTCTATTGAACAATGTAAAGACTTTGGGGACAAGATGGCCTCCTTGGAGATGAAGGACTGTGGACAGG
Downstream sequence
GGCATCATTGTCATTTTTATTGCTTTGAATAACTGTATATTAAAGGTTTTAAACAACTTATTAAAAGCCAATCAGTGAACAACACTACTTCAAGCACTGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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