Basic Information
VIS ID
TVIS44007715
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
110337417/109416261 (Hg38)
End
110337417/109416261 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/8085847; hsa-mir-1243/Downstream/72437;
Nearest TSS
ENST00000502981/Upstream/1851; ENST00000399100/Downstream/17503;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/113160, chr4-CpG: 138/Downstream/17047
Nearby gene
SEC24B-AS1(No orient, 13702)
Upstream sequence
ATTCCCACTAGGCTGCCACAGCTAAACACATGGTAAGCAGGACGGAAAtggcaaataaaaacaaatgtggatttgggtaaggagagacttgattcaaaat
Downstream sequence
gattattacaataggaggagagggactatggcaatagggagaacactcggaccatgcaaactgcaagtttctcaTTGgtctttataaggagattagcaca
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate