Basic Information
VIS ID
TVIS44007763
Fusion event
HTLV-1-FAM71D integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
67657480/67190763 (Hg38)
End
67657480/67190763 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA14B
Target gene
FAM71D
Nearest miRNA
hsa-mir-208a/Upstream/1719577; hsa-mir-1185-1/Downstream/251092;
Nearest TSS
ENST00000550708/Upstream/1302; ENST00000531566/Downstream/6011;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/681246, chr14-CpG: 95/Downstream/50273
Upstream sequence
AGGCTTTCTCTTCAAAGCTGAAAGGTTGGGCATGGGGATATCATTTTCAAGAGATAGAAGCCACAACAGTTAGACTCCTGCAAAGGTGCAACCAGAACTG
Downstream sequence
CAACCTAGAATTGTGCTGGACCTAGCCTAAAAATATGTTTATTAGTATAGTAAGAATCTTGGGAAAAATCACCCAGGTAAATGCCACACTTCAAAGTGCT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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