Basic Information
VIS ID
TVIS44007899
Fusion event
HTLV-1-LINC02291 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98111954/97645617 (Hg38)
End
98111954/97645617 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC02291
Nearest miRNA
hsa-mir-1260a/Upstream/2507631; hsa-mir-1185-1/Downstream/2463802;
Nearest TSS
ENST00000550708/Upstream/186747; ENST00000557072/Downstream/41010;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/426008, chr14-CpG: 53/Downstream/1472451
Upstream sequence
acagagacaaatccaaaacctggagctggcatccacaacctgtgagtccctagaaaatgcatctcatctctttgaggctcagtttccccaactgcaaatc
Downstream sequence
accaatgacaataccaaattgggaggatAAGAACTGTGAGATTGATAGGGAGAGTTGTGCAGGTAACTGTAGTAGGACAGGTAGAAGCCCCCCATGATGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate