Basic Information
VIS ID
TVIS44007913
Fusion event
HTLV-1-DND1P1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43663658/45586292 (Hg38)
End
43663658/45586292 (Hg38)
Orient
+
Location type
Intronic
Target gene
DND1P1
Nearest miRNA
hsa-mir-1180/Upstream/110857; hsa-mir-10226/Downstream/1386725;
Nearest TSS
ENST00000595228/Upstream/33437; ENST00000587305/Downstream/34052;
Nearest CpG islands
chr17-CpG: 144/Target, None/Upstream, None/Downstream
Nearby gene
MAPK8IP1P2(-13811) ;
Upstream sequence
CGCGGCGCGCAGGCCGCCATCGCCCGCTGCACAACCACCCGCTGCGGCCGTCCTGCCCGCTGCTTCTGTGCCGCAGCACCGGGAAGTGTGAGCTGAGCGT
Downstream sequence
TGACTGCCTGCCGCCGAATCTGACCCGCAccgcgctgcagcccgcgctgcagccGCTGGGTCCCGGCCTGCAGGAGGCGCGGCTGCTGCCCAGCCCCGGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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