Basic Information
VIS ID
TVIS44007988
Fusion event
HTLV-1-ANKRD18CP integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
99930648/97168366 (Hg38)
End
99930648/97168366 (Hg38)
Orient
-
Location type
Intronic
Target gene
ANKRD18CP
Nearest miRNA
hsa-let-7a-1/Upstream/2082272; hsa-mir-12126/Downstream/195188;
Nearest TSS
ENST00000422679/Upstream/128723; ENST00000420204/Downstream/29321;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/46885, chr9-CpG: 23/Downstream/31488
Nearby gene
SUGT1P4-STRA6LP(+70060) ;
Upstream sequence
gacagcaaaatgcctaggcagatatggaagggtccccagagaatctccaggcacacaagtgtctaccacagataaaacatctggtgcagataagggaacc
Downstream sequence
tgcacaggggcttgcctggacatgccagcagcagactggaggcccacatgcactggggagctggggtggagccaccaagaattcatgccttatgcagagg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate