Basic Information
VIS ID
TVIS44007993
Fusion event
HTLV-1-SLC16A2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
73665550/74445715 (Hg38)
End
73665550/74445715 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC16A2
miRNAs that regulate target gene
hsa-mir-17-5p ; hsa-mir-191-5p
Nearest miRNA
hsa-let-7f-2/Upstream/158358; hsa-mir-105-1/Downstream/2473558;
Nearest TSS
ENST00000429181/Upstream/23823; ENST00000590447/Downstream/75405;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/22784, chrX-CpG: 27/Downstream/90095
Upstream sequence
ATACTCAATTGTTAGCTCTTACTGTTAGAGCTAACAATTGAGTATAATGCTTCATAAGGAGAGACATAGTGATTctagcacctaacacaatgcactatac
Downstream sequence
atagtcagtgcttgataactttgtattgaaatgaaATGAGGGCCAGGAGTGGGAGAACATGAGCTTGTTTTGGGGAAGGCATTGTGGGCAAGAGGGGCCA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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