Basic Information
VIS ID
TVIS44008004
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
165895445/165926208 (Hg38)
End
165895445/165926208 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/18232; hsa-mir-1182/Downstream/228535;
Nearest TSS
ENST00000473358/Upstream/22215; ENST00000366136/Downstream/154975;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/97762, chr1-CpG: 26/Downstream/15195
Nearby gene
UCK2(+14590) ;
Upstream sequence
CTATTTTAAAAATGTCTTTATTGATTTGATCAAACTGGTGTTTTTAAAACTTCAGTTAAGGTGAGCTTTCCATGCACACACATTGGTGTGTGTGTGTATG
Downstream sequence
TGCATGTGTCAGGGGGCTGCTGGGGTGGGAATGGGGACCAAAGAGAGACTATTTTTAGAATAGCATTTCCTCTGAGGGGGTTTTAACCTGTTCTCTGCTG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate