VISDB Viral Integration Site DataBase

VIS ID

TVIS44008018

Fusion event

HTLV-1-CCSER2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr10

Cytoband

q23.1

Reference genome

Start

End

86194357/84434601 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-132-3p ; hsa-mir-26b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-298 ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-1247-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-495-5p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-4633-5p ; hsa-mir-873-3p ; hsa-mir-4719 ; hsa-mir-532-5p ; hsa-mir-3145-5p ; hsa-mir-1252-3p ; hsa-mir-3662 ; hsa-mir-548c-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4482-3p ; hsa-mir-676-5p ; hsa-mir-138-2-3p ; hsa-mir-4786-5p ; hsa-mir-6849-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4761-5p ; hsa-mir-4293 ; hsa-mir-624-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-4698 ; hsa-mir-513c-5p ; hsa-mir-514b-5p ; hsa-mir-552-5p ; hsa-mir-616-5p ; hsa-mir-8063 ; hsa-mir-149-3p ; hsa-mir-3160-5p ; hsa-mir-3175 ; hsa-mir-3606-3p ; hsa-mir-4267 ; hsa-mir-4662a-3p ; hsa-mir-4680-5p ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-4728-5p ; hsa-mir-508-5p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-5698 ; hsa-mir-656-3p ; hsa-mir-6785-5p ; hsa-mir-6794-5p ; hsa-mir-6870-5p ; hsa-mir-6878-5p ; hsa-mir-6883-5p ; hsa-mir-7111-5p ; hsa-mir-766-3p

Nearest miRNA

hsa-mir-1265/Upstream/8882048; hsa-mir-107/Downstream/1830093;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/105424, chr10-CpG: 49/Downstream/106042

Upstream sequence

ttgtcagatggtttagcaacaaatacatagatgcaaagcaaatgtgtcaatattttaacagttggtaaatataggtgaagggtatattgttgttcattgt

Downstream sequence

agtattcttttgatacttctatttcaagaaatgtttcaagataaaGAGGTTGGAAACTTAATAATATTatagtaagtcatttttatttaatatttactat