Basic Information
VIS ID
TVIS44008085
Fusion event
HTLV-1-LOC105371953 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
1207151/1207150 (Hg38)
End
1207151/1207150 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371953
Nearest miRNA
hsa-mir-8078/Upstream/1094811; hsa-mir-1-2/Downstream/2678203;
Nearest TSS
ENST00000575820/Upstream/48009; ENST00000583163/Downstream/151612;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/297577, chr18-CpG: 33/Downstream/1364137
Nearby gene
LINC00470(-61161) ;
Upstream sequence
ttttaattatgtctgtgtggtatatcacatttattgacttatatatgataaatcatccctgcatccttggtatgaaacccacttgattatggtgcattat
Downstream sequence
ctttttgatttgttgttggacacggttagctagtattttgttaaggatttttacatctattttcatcaaggacattggtctgtagttttgttttttggct
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate