Basic Information
VIS ID
TVIS44008195
Fusion event
HTLV-1-MAN1B1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
GRCh37/hg19
Start
139994884/137100432 (Hg38)
End
139994884/137100432 (Hg38)
Orient
-
Location type
Intronic
Target gene
MAN1B1
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-125b-5p
Nearest miRNA
hsa-let-7a-1/Upstream/213629; hsa-mir-3621/Downstream/68754;
Nearest TSS
ENST00000422679/Upstream/11251; ENST00000536268/Downstream/2081;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/12997, chr9-CpG: 14/Downstream/2962
Upstream sequence
AACGACGTGTGTAATTTTTTTGGGTCGTAGCCTTTGGTTGTGACCCATTGGTGGCCATAGCAACTGCACTGCTGACTCCGTTTTATTAACAAATGTTGAC
Downstream sequence
GACTTCAAGATTTACCCCCTTGAGATAGGAGGTGATATTGAAGCCCTGCAGGGGAACGATAACGCCCCAGACATGGGTTTGGttttttgtttttgttttt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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