Basic Information
VIS ID
TVIS44008208
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q28
Reference genome
GRCh37/hg19
Start
154039084/154810809 (Hg38)
End
154039084/154810809 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRAXE ; FRAXF
Nearest miRNA
hsa-let-7f-2/Upstream/42153; hsa-mir-1184-1/Downstream/76551;
Nearest TSS
ENST00000429181/Upstream/5282; ENST00000620016/Downstream/10198;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/5149, chrX-CpG: 42/Downstream/74040
Nearby gene
MPP1(-5282) ;
Upstream sequence
ttctgaataccattacattgagaattaagtttcaacataggaatttgggggaacacaaatatccagactgtagcataattccagaacggattcatcaccc
Downstream sequence
acggggaccccagccccatgagtagtcactccccattcctagtccctggcaaccactaatctactttctgtAGGACCACTAACTGAATCTACCACAAGGG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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