Basic Information
VIS ID
TVIS44008218
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
209317591/209144246 (Hg38)
End
209317591/209144246 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/1341723; hsa-mir-1182/Downstream/287887;
Nearest TSS
ENST00000473358/Upstream/171792; ENST00000448988/Downstream/10855;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/899962, chr1-CpG: 72/Downstream/87254
Nearby gene
MIR205HG(No orient, 284577)
Upstream sequence
GAAATTAAAGAGTAAAACTCTGCTAGTGTCTTCTTAAATGGCAGCATTTTGGCACCTTAGTAGATGCACTCCCAAAGAGGAGCTGCGTCACATTCATCTT
Downstream sequence
GTTCTCCAAATGACCTTTAGGTAATGAACCTCAAAGTTTTCTCTTCCCTGCCCCACAACTCTATCCCTTCTTTTCCATGCTGGAGGAGATATCTGGCTAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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