VISDB Viral Integration Site DataBase

VIS ID

TVIS44008274

Fusion event

HTLV-1-NCS1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr9

Cytoband

q34.11

Reference genome

Start

End

132946567/130184288 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-132-3p ; hsa-mir-1-3p ; hsa-mir-744-5p ; hsa-mir-484 ; hsa-mir-331-3p ; hsa-mir-330-3p ; hsa-mir-198 ; hsa-mir-6781-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-3202 ; hsa-mir-6837-5p ; hsa-mir-4258 ; hsa-mir-4685-5p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-3918 ; hsa-mir-3065-3p ; hsa-mir-6871-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4436b-5p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-3182 ; hsa-mir-4679 ; hsa-mir-4677-3p ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-642b-5p ; hsa-mir-3692-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6826-3p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6892-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-6800-3p ; hsa-mir-1184 ; hsa-mir-1286 ; hsa-mir-1343-5p ; hsa-mir-3150a-3p ; hsa-mir-3150b-3p ; hsa-mir-3175 ; hsa-mir-4418 ; hsa-mir-4436a ; hsa-mir-4667-5p ; hsa-mir-4700-5p ; hsa-mir-4722-5p ; hsa-mir-4746-5p ; hsa-mir-4756-3p ; hsa-mir-4779 ; hsa-mir-4784 ; hsa-mir-486-3p ; hsa-mir-5000-3p ; hsa-mir-509-3-5p ; hsa-mir-509-5p ; hsa-mir-661 ; hsa-mir-6731-5p ; hsa-mir-6741-5p ; hsa-mir-6763-5p ; hsa-mir-6805-5p ; hsa-mir-6825-5p ; hsa-mir-6852-5p ; hsa-mir-7156-3p ; hsa-mir-8085 ; hsa-mir-8089 ; hsa-mir-873-5p ; hsa-mir-939-5p ; hsa-mir-3605-3p ; hsa-mir-4269 ; hsa-mir-6079 ; hsa-mir-6715b-5p ; hsa-mir-671-5p ; hsa-mir-6828-5p ; hsa-mir-7109-3p

Nearest miRNA

hsa-let-7a-1/Upstream/314617; hsa-mir-12126/Downstream/57099;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/11024, chr9-CpG: 99/Downstream/81170

Upstream sequence

ttgctctccacttctagccctgtgaccacttccttctctgaatctcTGCAGAACTGGGAGAGGGATGCTGAGCCAAGATGGCTTTTCTGGTGGTCTGGTG

Downstream sequence

TCCGGGGCTCCTCTCAGGGACCCAcaggcctggattcaaatcccaaggcctctactggttagttctgggaccttggtctggcctttcccaccgagccctc