Basic Information
VIS ID
TVIS44008370
Fusion event
HTLV-1-PSD2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
139104266/139724681 (Hg38)
End
139104266/139724681 (Hg38)
Orient
-
Location type
Intronic
Target gene
PSD2
Nearest miRNA
hsa-mir-10397/Upstream/2077032; hsa-mir-103a-1/Downstream/838990;
Nearest TSS
ENST00000502646/Upstream/40036; ENST00000607370/Downstream/21542;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/13253, chr5-CpG: 16/Downstream/15744
Upstream sequence
ggagcccagcctatctgtggaagatgctaaatgaggcagggggtggagtataagggggcagagagaagggcaggggagggcattcatttagggcactgca
Downstream sequence
gaccaggagaagaggtctgggctcaacgtagtggcatgggggtccactgAGATAACTTCCCATCCCCCATCTCACATGTTactttcctatctctaagacc
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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