Basic Information
VIS ID
TVIS44008390
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
82906238/80291323 (Hg38)
End
82906238/80291323 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/9481239; hsa-let-7a-1/Downstream/3678425;
Nearest TSS
ENST00000422679/Upstream/260744; ENST00000413050/Downstream/579972;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/717678, chr9-CpG: 255/Downstream/1395901
Nearby gene
LINC01507(No orient, 256768)
Upstream sequence
TGGTTGTAAAAAGGTCATGATGAATTCATACTTCATTCAGGCAAGTGCTCATACGTAAGGGACTCTCCTCAAGTGAACTGGGCAGGCTGGCCAGGGATCC
Downstream sequence
CAGGCGATAATCAAGGTCAAAGACTATTTtttttctttttttattatactttaagttttagggcacatgtgcacaatgtgcaggttagttacatatgtat
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate