Basic Information
VIS ID
TVIS44008394
Fusion event
HTLV-1-chr9 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.33
Reference genome
GRCh37/hg19
Start
102109313/99347031 (Hg38)
End
102109313/99347031 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1117814; hsa-mir-12126/Downstream/7253897;
Nearest TSS
ENST00000422679/Upstream/124716; ENST00000413271/Downstream/9233;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/50100, chr9-CpG: 400/Downstream/472478
Nearby gene
NAMA(No orient, 8309)
Upstream sequence
ATAGCCTGGTTATAATTTATTAATCCCTTTCATCAAATTTTCAGCATCCCTTTCCCCAGGAGTCTAAGACTGACTCAAATGTATTTATTGTTTCTAGGTG
Downstream sequence
GGGTGTCATTAAATATTTGGCATCTCCTAAAGCTGGTTGGGAAACTGGATTATATACTACGTGCAGGCACACAATTTCTGAAGGGAAAAGCATGAACTGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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