Basic Information
VIS ID
TVIS44008400
Fusion event
HTLV-1-LOC107985698 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
127553534/128419556 (Hg38)
End
127553534/128419556 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985698
Nearest miRNA
hsa-let-7f-2/Upstream/7048503; hsa-mir-105-1/Downstream/5749822;
Nearest TSS
ENST00000429181/Upstream/367158; ENST00000486673/Downstream/180912;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1838218, chrX-CpG: 50/Downstream/1103318
Nearby gene
ACTRT1(-367152) ;
Upstream sequence
catgcgacctgaactgcctgtcatgaactgggtgctttttgacccatctagtcataacatggggcatgcacagcagcattccatcgtcaaatggaagtgg
Downstream sequence
tatatatgtgataggccttgagcaggtcctgaaagcacaagtaagttacatgaggaagtggctcaaatgcccatgatctgcactcctgccaccctgcctt
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate