Basic Information
VIS ID
TVIS44008420
Fusion event
HTLV-1-LINC01507 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
82603729/79988814 (Hg38)
End
82603729/79988814 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01507
Nearest miRNA
hsa-mir-101-2/Upstream/9178730; hsa-let-7a-1/Downstream/3980934;
Nearest TSS
ENST00000422679/Upstream/13791; ENST00000417801/Downstream/41765;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/415169, chr9-CpG: 255/Downstream/1698410
Upstream sequence
CTTAAATTCTGTGCCTTTACTGTACTAGTAATTTTTATTTAATTTGTGAGAAAGGGTACTAAAGATATTTTCCATTTCACTATCCTAAAGCCCTTTTCCC
Downstream sequence
CTTTTAGATATCTGCCAAAACTAAGGGCATTTTGCCACTAGGTGATGGTACTTTCCAATGTGCTTTAAATTCAAAGTCCAAGATACATCCAAATACAAAG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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