VISDB Viral Integration Site DataBase

VIS ID

TVIS44008436

Fusion event

HTLV-1-OTUD7B integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

149919553/149947652 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1229-3p ; hsa-mir-877-5p ; hsa-mir-339-5p ; hsa-mir-16-5p ; hsa-mir-500a-5p ; hsa-mir-218-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-638 ; hsa-mir-6499-3p ; hsa-mir-4537 ; hsa-mir-1292-3p ; hsa-mir-4799-5p ; hsa-mir-6892-5p ; hsa-mir-6878-5p ; hsa-mir-5703 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-658 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-95-5p ; hsa-mir-154-5p ; hsa-mir-7846-3p ; hsa-mir-6760-5p ; hsa-mir-4475 ; hsa-mir-6874-5p ; hsa-mir-513b-5p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-8077 ; hsa-mir-4765 ; hsa-mir-1236-5p ; hsa-mir-6134 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-3160-3p ; hsa-mir-125b-2-3p ; hsa-mir-4756-5p ; hsa-mir-4457 ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-587 ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4282 ; hsa-mir-7850-5p ; hsa-mir-6079 ; hsa-mir-4533 ; hsa-mir-4733-5p ; hsa-mir-7703 ; hsa-mir-500a-3p ; hsa-mir-5708 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-6721-5p ; hsa-mir-4663 ; hsa-mir-661 ; hsa-mir-767-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6849-3p ; hsa-mir-939-3p ; hsa-mir-1273g-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-508-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3202 ; hsa-mir-7160-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-7854-3p ; hsa-mir-7162-3p ; hsa-mir-383-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1559289; hsa-mir-1182/Downstream/544693;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/19651, chr1-CpG: 70/Downstream/62552

Upstream sequence

ctatcctgtagggttgttgtaaagattaaaacagtgtttggaaagagcccagcacagtgtctggaaaatgggaaatactagatagtagccattatcattG

Downstream sequence

TTGTTGTTGTAAATATTATTTAGAAGGAGCTTTTGATAAATAGGTGAGAGGTTATTTTTAAAAAGCCATAAACTCTGGATTTTAAAATCAAACTCTCTTA