Basic Information
VIS ID
TVIS44008481
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
57109477/56817279 (Hg38)
End
57109477/56817279 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/1444245; hsa-mir-11181/Downstream/2353904;
Nearest TSS
ENST00000557528/Upstream/83193; ENST00000621974/Downstream/69828;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/83327, chr15-CpG: 57/Downstream/69800
Nearby gene
LOC145783(-68891) ;
Upstream sequence
GAATTCCAAAGACACTTTTCCTAAAAATAACTCAAAGACATGCAGGAGGAAATTAGCATACTGTATTTTCTTCAGCTATAATTTACAGTGTGTAATCTAA
Downstream sequence
AAATGTGCAACAAAGCAATGCTAGTAGTGCAGAGAAAATTCCCCTGGGATATTTGGTTCCATTTAAAAACACCTCAGTATGGGGGGGATGTGGGAGCAGC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate