VISDB Viral Integration Site DataBase

VIS ID

TVIS44008491

Fusion event

HTLV-1-GJD3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

Adult T-cell leukemia (ATL)

Quality evaluation

Normal

Reported year

2014

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.2

Reference genome

Start

End

38520702/40364450 (Hg38)

Orient

+

Location type

UTR5

Target gene

miRNAs that regulate target gene

hsa-mir-510-3p ; hsa-mir-4474-3p ; hsa-mir-4738-3p ; hsa-mir-5582-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-2681-5p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-6732-5p ; hsa-mir-6856-5p ; hsa-mir-7153-3p ; hsa-mir-6758-5p ; hsa-mir-7159-5p ; hsa-mir-26b-3p ; hsa-mir-3065-5p ; hsa-mir-654-3p ; hsa-mir-580-5p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-505-3p ; hsa-mir-421 ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-3182 ; hsa-mir-4680-3p ; hsa-mir-5187-3p ; hsa-mir-4427 ; hsa-mir-138-2-3p ; hsa-mir-4762-5p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-4633-5p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-3065-3p ; hsa-mir-532-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4284 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6852-5p ; hsa-mir-6742-3p ; hsa-mir-939-3p ; hsa-mir-660-3p ; hsa-mir-6890-3p ; hsa-mir-3613-3p ; hsa-mir-4668-5p ; hsa-mir-629-3p ; hsa-mir-3692-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-2355-5p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-4755-3p ; hsa-mir-942-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-1236-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-877-3p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-6777-3p ; hsa-mir-4639-3p ; hsa-mir-382-3p ; hsa-mir-605-5p ; hsa-mir-24-3p ; hsa-mir-1972 ; hsa-mir-34b-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-383-3p ; hsa-mir-4690-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-498 ; hsa-mir-6836-3p ; hsa-mir-5001-3p ; hsa-mir-4279 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-4714-3p ; hsa-mir-5571-5p ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-5009-3p ; hsa-mir-512-3p ; hsa-mir-552-3p ; hsa-mir-4796-3p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-4632-3p

Nearest miRNA

hsa-mir-1180/Upstream/170787; hsa-mir-10226/Downstream/1152714;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/438, chr17-CpG: 47/Downstream/53014

Upstream sequence

TTACTGCAGTGAACTCCTCTCAGGGTGGGGGGCTGGTACAGAGGCAACTCCGCTTTCATAACTCTCACAGGGTCCTTTGTCGGAGGTGTCCCTGCCCTCC

Downstream sequence

TACCCCAGCGTGGTGGGAGTGCGACGCCAGGCTTCTCCCTCCTCCCTGGCCTCCTGTGCCTCCAGCCTCCACATCTCCTGAGATCCTCCCCACCCCACAC