Basic Information
VIS ID
TVIS44008545
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q28
Reference genome
GRCh37/hg19
Start
190207093/190489304 (Hg38)
End
190207093/190489304 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/659295; hsa-mir-3137/Downstream/4645202;
Nearest TSS
ENST00000440867/Upstream/39428; ENST00000465496/Downstream/24747;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/166628, chr3-CpG: 71/Downstream/24237
Nearby gene
IL1RAP(+24747) ;
Upstream sequence
cttccttccttcctctcttccttccttcttttcttccttccttccCCCTGATctaatttgatcttaccctagcaggtgactgcttttattgtcccatgcc
Downstream sequence
catttaaatacaggttgaatgaagctcaggcaaattagcaatctgcccaatgtcatccaattaactaacagtgtatctcagattcagactcaagagggag
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate