Basic Information
VIS ID
TVIS44008567
Fusion event
HTLV-1-LOC105374602 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
48213/48119 (Hg38)
End
48213/48119 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374602
Nearest miRNA
hsa-mir-10397/Downstream/1014777;
Nearest TSS
ENST00000502646/Downstream/44032;
Nearest CpG islands
None/Target, None/Upstream, chr5-CpG: 87/Downstream/2571
Upstream sequence
ACACAAACCCCTTTTTCCATGCACTAGATCTCGGGGTATAACTTTTATGAACTTTAATTTCCTTCTAGTTAAATAAAAATAACAATATCTACTTGATGTG
Downstream sequence
TTGCCTTGTACGTTGTGTATGAAGAGCCTAGAATGACGATCGACCCAAAAATGGAGTCAGTACTTTGATCCATTCACTCTTGGGTGCTGGGCTCCTCAGG
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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