Basic Information
VIS ID
TVIS44008584
Fusion event
HTLV-1-LOC285766 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
198592/198592 (Hg38)
End
198592/198592 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC285766
Nearest miRNA
hsa-mir-10398/Downstream/1191722;
Nearest TSS
ENST00000381078/Downstream/4721;
Nearest CpG islands
None/Target, None/Upstream, chr6-CpG: 120/Downstream/93356
Upstream sequence
CCCTGAAGCTCATCTCTCTAGAAAGGGGGAAGTTCAAAACATGGAAAAGGTAATGGTATCACACAGAACTCACAAACATGTGTCAGAAATTGTTAATATA
Downstream sequence
ATGAATTGGAATGGCCTACAAAAAAAAAATTTCAGGGAGGATGTTAAGtggcaatttcaagtatttgaaactcagttacaaattcaggagtaaaagagct
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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