Basic Information
VIS ID
TVIS44008625
Fusion event
HTLV-1-LOC100507103 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr9
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
93798798/91036516 (Hg38)
End
93798798/91036516 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA9D
Target gene
LOC100507103
Nearest miRNA
hsa-mir-101-2/Upstream/1012981; hsa-let-7a-1/Downstream/599735;
Nearest TSS
ENST00000422679/Upstream/39462; ENST00000608240/Downstream/70788;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/234252, chr9-CpG: 61/Downstream/80927
Nearby gene
LOC100129316(-26778) ;
Upstream sequence
AAACCCTGGACTTCTTGATGCCGTCACAGCCTGGCAGCACCTGCTTGTCCAGCAGACCAGCCACCGCTCCCCGATTCACCATGCCTCAGCCACGTGGGCC
Downstream sequence
AACATTCCCTTCCACTGAAGGCACCTGTGAGACTACAGGGACCACCAGCCACAATATCAAGCCCTCCTCCTCCTGCCCCATCACCCCTAGCCACCCAGGC
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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