Basic Information
VIS ID
TVIS44008631
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
87872436/88617435 (Hg38)
End
87872436/88617435 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/2713728; hsa-mir-105-1/Downstream/6445706;
Nearest TSS
ENST00000429181/Upstream/866552; ENST00000373111/Downstream/129790;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2468562, chrX-CpG: 43/Downstream/2817168
Nearby gene
CPXCR1(+129790) ;
Upstream sequence
gatgccaggatcctaacacttggaaaaacctgtagactgcaacaaaataacttttttttctttttttcttttcttttttttttttttttttggagaaagg
Downstream sequence
gtctctgtcacccaggctggagtccagtggcacaatcttggctcactgcaacatacacatcctgggttcaagtgattctcatgcctcagctttccaggtg
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate