Basic Information
VIS ID
TVIS44008664
Fusion event
HTLV-1-SACS integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.12
Reference genome
GRCh37/hg19
Start
23971392/23397253 (Hg38)
End
23971392/23397253 (Hg38)
Orient
-
Location type
Intronic
Target gene
SACS
miRNAs that regulate target gene
hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-1226-3p ; hsa-mir-424-5p ; hsa-mir-20a-5p ; hsa-mir-218-5p ; hsa-mir-106b-5p ; hsa-mir-4465 ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-5697 ; hsa-mir-3159 ; hsa-mir-5684 ; hsa-mir-216b-3p ; hsa-mir-6512-5p ; hsa-mir-302a-5p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30b-5p ; hsa-mir-30a-5p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-17-5p
Nearest miRNA
hsa-mir-4499/Upstream/2963407; hsa-mir-1267/Downstream/765163;
Nearest TSS
ENST00000623511/Upstream/21710; ENST00000443092/Downstream/21718;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/21627, chr13-CpG: 57/Downstream/69075
Upstream sequence
aaaaaaggttggtaatggttaaaaattataatccatatttgtaaaggaaactattacaattaataagggtgaggtgaaacaactttgtttgcaaactctg
Downstream sequence
ttttcattaagggaaaagagagtaattttgttctaaagtaaaatgactggttgttccagaatgagaaagaaacaaatataggacaaaacttgaataacta
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate