Basic Information
VIS ID
TVIS44008668
Fusion event
HTLV-1-EDNRB-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q22.3
Reference genome
End
78409702/77835567 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1297/Upstream/137451; hsa-mir-1267/Downstream/9783098;
Upstream sequence
TTGTCTTGGCCAGAAATCTAGATGCTGACATCATGGGAAATATCCTTTTAGTTTGATGTATGCATCTTTCTTCAGGGCTCTTTATCCTTTAATACCTAAT
Downstream sequence
TGTTCTACCTTGTTTTTTTTTTTTTTTCATTCCTACTCCTTTTCTTCTACCCCTTAGGTCATATGTATCTATCTTCGTCACAGTCAAGGTGGCCCCTGTA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Curate