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Viral Integration Site DataBase
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TVIS44008681
Basic Information
VIS ID
TVIS44008681
Fusion event
HTLV-1-ITGAL integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
30531183/30519862 (Hg38)
End
30531183/30519862 (Hg38)
Orient
-
Location type
Exonic
Target gene
ITGAL
miRNAs that regulate target gene
hsa-mir-6878-3p
;
hsa-mir-640
;
hsa-mir-378a-5p
;
hsa-mir-4764-3p
;
hsa-mir-6821-3p
;
hsa-mir-6790-3p
;
hsa-mir-3653-5p
;
hsa-mir-3189-3p
;
hsa-mir-212-5p
;
hsa-mir-4667-3p
;
hsa-mir-3934-5p
;
hsa-mir-764
;
hsa-mir-125a-3p
;
hsa-mir-6865-3p
Nearest miRNA
hsa-mir-1225/Upstream/15861; hsa-mir-11401/Downstream/355404;
Nearest TSS
ENST00000527434/Upstream/106;
ENST00000569752/Downstream/6727;
Nearest CpG islands
None/Target,
chr16-CpG: 29/Upstream/45462
,
chr16-CpG: 57/Downstream/4658
Upstream sequence
CCGGATAGGAGGAGATGGGGAATGGAACCAGGTTCACAGGGACTTTCAGGGGTGGAAAAGGCATTTTCCGGCACTCCCCTCCCCCTGCTCCCAGGTTGTC
Downstream sequence
ATGAAGGTTGACGTGGTGTATGAGAAGCAGATGCTCTACCTCTACGTGCTGAGCGGCATCGGGGGGCTGCTGCTGCTGCTGCTCATTTTCATAGTGCTGT
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
Sample Information
×
Sample name
ATL188
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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