Basic Information
VIS ID
TVIS44008687
Fusion event
HTLV-1-WDR7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
54454997/56787766 (Hg38)
End
54454997/56787766 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA18B
Target gene
WDR7
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-18a-3p
Nearest miRNA
hsa-mir-1-2/Upstream/1308468; hsa-mir-122/Downstream/1663308;
Nearest TSS
ENST00000575820/Upstream/30441; ENST00000586124/Downstream/86204;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/136212, chr18-CpG: 24/Downstream/333962
Upstream sequence
AAATGTTTTGGGTTTGACTTTCAACAAGCCACACTGTAGTACCTATTTTAACCTGGAATTGAAGTCACTTTTCTGATGATTATAAAGTAGTGGTCATTCT
Downstream sequence
GAGCACAAATGTGGATGGACCAACACTATACAAGAAGGTAAGATGAAACTGTGTTACAGAGGGAGTTGAAAAGGATATTGTAGCTAGTAAAAATAGTTTA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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