Basic Information
VIS ID
TVIS44008690
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
16365021/16183753 (Hg38)
End
16365021/16183753 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/3446309; hsa-mir-10b/Downstream/3164676;
Nearest TSS
ENST00000437798/Upstream/77912; ENST00000444804/Downstream/18677;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/169456, chr2-CpG: 50/Downstream/324342
Nearby gene
GACAT3(No orient, 139210)
Upstream sequence
aatcccggcactttgggaggctgaggcaggaggattgcttgagcccaggagttcgagaccagcctgggcaacatggggacaccatgtctctataaaaaat
Downstream sequence
aaagttaaaaattagcgctgggagcagtggctcacgcctgtagtcccagcactttgggaggctgaggtgggcagatcacctgaagtcaggagttcaagac
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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