Basic Information
VIS ID
TVIS44008715
Fusion event
HTLV-1-LINC01192 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
Adult T-cell leukemia (ATL)
Quality evaluation
Normal
Reported year
2014
PubMed ID
24735963
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
162921492/163203704 (Hg38)
End
162921492/163203704 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01192
Nearest miRNA
hsa-let-7g/Upstream/2798879; hsa-mir-1224/Downstream/967767;
Nearest TSS
ENST00000440867/Upstream/20794; ENST00000477099/Downstream/16437;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1830843, chr3-CpG: 20/Downstream/800558
Upstream sequence
ataaataaatataaaaataaTGAATGGCAAAgagatcagagagtttccaagggtctggatcttagaagtccttgtaagccatgctaagaacttACATTAA
Downstream sequence
TTTATATTTGTTTTTGATTTTAGATAATAATGTATATTTACTTTGTTTTAGAAAAGAAAGACAAAGGTGCAAATTTTACAACTTAAAAAGTAAGAGGAGA
Reference
Cook, L. B., et al. The role of HTLV-1 clonality, proviral structure, and genomic integration site in adult T-cell leukemia/lymphoma. Blood,2014, 123(25): 3925-3931.
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